Other 📚

• Non-B GFA
  • gfa programs for Non-B site at NCI/FNLCR. gfa is a Suite of programs developed at NCI-Frederick/Frederick National Lab to find sequences associated with non-B DNA forming motifs.
• spacesavers2
  • Spacesavers2 has a suite of tools to quickly crawl through a file system to identify duplicates, assess per-user or per-project disk usage and monitor disk allocation with a monthly report
• Dockers
  • A large collection of 100+ CCBRs Docker recipes.
• permfix
  • A python toolkit to automatically fix user permissions on shared file systems. This can easily be setup as a cronjob.
• pyrkit
  • A tool to archive and co-locate NGS data with project-level, sample-level, and analysis-specific metadata prior to depositing in HPCDME.
• CCBR_SnakemakeTemplate
  • Barebones template for creating new Snakemake workflows
• CCBR_NextflowTemplate
  • Barebones template for creating new Nextflow workflows
• rNA
  • R tool to generate comprehensive and interactive QC report for RENEE output.